HL_5D8H_001

3D structure

PDB id

5D8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases (A, C, G, U)

1180A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5D8H|1|A|C|1174
5D8H|1|A|U|1175
5D8H|1|A|U|1176
5D8H|1|A|A|1177
5D8H|1|A|G|1178
5D8H|1|A|A|1179
5D8H|1|A|A|1180
5D8H|1|A|G|1181
5D8H|1|A|C|1182
5D8H|1|A|A|1183
5D8H|1|A|G|1184

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L11

Chain D

THIOSTREPTON