HL_5DAT_056
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 5DAT|1|1|A|2637, 5DAT|1|1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DAT_056 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.0542
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
5DAT|1|1|U|2633
5DAT|1|1|U|2634
5DAT|1|1|A|2635
5DAT|1|1|A|2636
5DAT|1|1|A|2637
5DAT|1|1|C|2638
5DAT|1|1|G|2639
5DAT|1|1|A|2640
5DAT|1|1|U|2641
5DAT|1|1|A|2642
5DAT|1|1|A|2643
5DAT|1|1|C|2644
5DAT|1|1|G|2645
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain M0
- 60S ribosomal protein L10
- Chain N1
- 60S ribosomal protein L21-A
- Chain N9
- 60S ribosomal protein L29
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