HL_5DAT_082
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5DAT|1|2|C|402, 5DAT|1|2|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DAT_082 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0767
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DAT|1|2|C|393
5DAT|1|2|C|394
5DAT|1|2|U|395
5DAT|1|2|G|396
5DAT|1|2|A|397
5DAT|1|2|G|398
5DAT|1|2|A|399
5DAT|1|2|A|400
5DAT|1|2|A|401
5DAT|1|2|C|402
5DAT|1|2|G|403
5DAT|1|2|G|404
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D4
- 40S ribosomal protein S24-A
- Chain S4
- 40S ribosomal protein S4-A
- Chain S6
- 40S ribosomal protein S6-A
- Chain S8
- 40S ribosomal protein S8-A
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