3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GUAACUAUGAC
Length
11 nucleotides
Bulged bases
5DAT|1|5|A|2256
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5DAT_162 not in the Motif Atlas
Homologous match to HL_5TBW_049
Geometric discrepancy: 0.0962
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5DAT|1|5|G|2253
5DAT|1|5|U|2254
5DAT|1|5|A|2255
5DAT|1|5|A|2256
5DAT|1|5|C|2257
5DAT|1|5|U|2258
5DAT|1|5|A|2259
5DAT|1|5|U|2260
5DAT|1|5|G|2261
5DAT|1|5|A|2262
5DAT|1|5|C|2263

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 6
Small subunit ribosomal RNA; SSU rRNA
Chain e0
40S ribosomal protein S30-A

Coloring options:


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