HL_5DAT_234

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

5DAT|1|2|U|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAT_234 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.3233

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DAT|1|2|U|828
5DAT|1|2|A|829
5DAT|1|2|U|830
5DAT|1|2|U|831
5DAT|1|2|U|832
5DAT|1|2|U|833
5DAT|1|2|G|834
5DAT|1|2|U|835
5DAT|1|2|U|836
5DAT|1|2|G|837
5DAT|1|2|G|838
5DAT|1|2|U|839
5DAT|1|2|U|840
5DAT|1|2|U|841
5DAT|1|2|C|842
5DAT|1|2|U|843
5DAT|1|2|A|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A