Motif HL_08554.1 Version HL_08554.1 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_210 | 8C3A | 0.0000 | 0 | Pseudoknot geometry (H) | CM | SSU rRNA | U | 813 | A | 814 | U | 815 | U | 816 | U | 817 | U | 818 | G | 819 | U | 820 | U | 821 | G | 822 | G | 823 | U | 824 | U | 825 | U | 826 | C | 827 | U | 828 | A | 829 | cWW | |
| 2 | HL_6XKO_001 | 6XKO | 0.6819 | 0 | A | PreQ1-III riboswitch | C | 4 | A | 5 | A | 6 | C | 7 | U | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | U | 14 | U | 15 | U | 16 | U | 17 | A | 18 | G | 19 | G | 20 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUUUUGUUGGUUUCUA | 1 |
| CAACUUAGGAUUUUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUUUGUUGGUUUCU | 1 |
| AACUUAGGAUUUUAG | 1 |
- Annotations
-
- (1)
- Pseudoknot geometry (H) (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.68 | Avg 0.34 | Max 0.68
Coloring options: