HL_5DAT_246

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

5DAT|1|2|U|1057, 5DAT|1|2|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DAT_246 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.5806

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5DAT|1|2|U|1055
5DAT|1|2|U|1056
5DAT|1|2|U|1057
5DAT|1|2|U|1058
5DAT|1|2|U|1059
5DAT|1|2|U|1060
5DAT|1|2|A|1061
5DAT|1|2|A|1062
5DAT|1|2|U|1063
5DAT|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

40S ribosomal protein S17-A

Chain D7

40S ribosomal protein S27-A

Chain S1

40S ribosomal protein S1-A