HL_5DC3_012

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

5DC3|1|1|U|545, 5DC3|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_012 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.1133

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5DC3|1|1|U|540
5DC3|1|1|U|541
5DC3|1|1|G|542
5DC3|1|1|C|543
5DC3|1|1|C|544
5DC3|1|1|U|545
5DC3|1|1|C|546
5DC3|1|1|G|547
5DC3|1|1|G|548
5DC3|1|1|U|549
5DC3|1|1|A|550
5DC3|1|1|A|551

Current chains

Chain 1

25S ribosomal RNA

Nearby chains