HL_5DC3_026
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- 5DC3|1|1|A|1153, 5DC3|1|1|A|1154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DC3_026 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.0643
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DC3|1|1|G|1148
5DC3|1|1|G|1149
5DC3|1|1|A|1150
5DC3|1|1|U|1151
5DC3|1|1|G|1152
5DC3|1|1|A|1153
5DC3|1|1|A|1154
5DC3|1|1|C|1155
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L7
- 60S ribosomal protein L7-A
- Chain O2
- 60S ribosomal protein L32
- Chain O3
- 60S ribosomal protein L33-A
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