HL_5DC3_137

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

5DC3|1|5|A|1025, 5DC3|1|5|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_137 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3718

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5DC3|1|5|C|1023
5DC3|1|5|G|1024
5DC3|1|5|A|1025
5DC3|1|5|A|1026
5DC3|1|5|A|1027
5DC3|1|5|U|1028
5DC3|1|5|G|1029

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain e1

Ubiquitin-40S ribosomal protein S31

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1