HL_5DC3_167

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_167 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1547

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5DC3|1|5|A|2535
5DC3|1|5|A|2536
5DC3|1|5|U|2537
5DC3|1|5|U|2538
5DC3|1|5|C|2539
5DC3|1|5|A|2540
5DC3|1|5|U|2541
5DC3|1|5|U|2542
5DC3|1|5|U|2543
5DC3|1|5|U|2544

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l8

60S ribosomal protein L8-A

Chain s1

40S ribosomal protein S1-A