HL_5DC3_232

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_232 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.3548

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5DC3|1|2|U|828
5DC3|1|2|A|829
5DC3|1|2|U|830
5DC3|1|2|U|831
5DC3|1|2|U|832
5DC3|1|2|U|833
5DC3|1|2|G|834
5DC3|1|2|U|835
5DC3|1|2|U|836
5DC3|1|2|G|837
5DC3|1|2|G|838
5DC3|1|2|U|839
5DC3|1|2|U|840
5DC3|1|2|U|841
5DC3|1|2|C|842
5DC3|1|2|U|843
5DC3|1|2|A|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A