HL_5DC3_236

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

5DC3|1|5|U|3195, 5DC3|1|5|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DC3_236 not in the Motif Atlas

Homologous match to HL_8P9A_179

Geometric discrepancy: 0.4041

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5DC3|1|5|C|3193
5DC3|1|5|C|3194
5DC3|1|5|U|3195
5DC3|1|5|U|3196
5DC3|1|5|G|3197
5DC3|1|5|U|3198
5DC3|1|5|G|3199

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l9

60S ribosomal protein L9-A

Chain m4

60S ribosomal protein L14-A

Chain m6

60S ribosomal protein L16-A