HL_5DDP_002

3D structure

PDB id

5DDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

L-glutamine riboswitch bound with L-glutamine

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

5DDP|1|A|U|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

U1 small nuclear ribonucleoprotein A binding hairpin

Broad Annotation

No text annotation

Motif group

HL_33074.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5DDP|1|A|C|34
5DDP|1|A|A|35
5DDP|1|A|U|36
5DDP|1|A|U|37
5DDP|1|A|G|38
5DDP|1|A|C|39
5DDP|1|A|A|40
5DDP|1|A|C|41
5DDP|1|A|U|42
5DDP|1|A|C|43
5DDP|1|A|C|44
5DDP|1|A|G|45

Current chains

Chain A

RNA (61-MER)

Nearby chains

Chain B

Glutamine riboswitch; glnA

Chain D

U1 small nuclear ribonucleoprotein A