HL_5DFE_100

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_100 not in the Motif Atlas

Homologous match to HL_7RQB_065

Geometric discrepancy: 0.0612

The information below is about HL_7RQB_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53171.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

18

Unit IDs

5DFE|1|RA|C|2701
5DFE|1|RA|U|2702
5DFE|1|RA|C|2703
5DFE|1|RA|C|2704
5DFE|1|RA|A|2705
5DFE|1|RA|G|2706

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17