Motif HL_53171.2 Version HL_53171.2 of this group appears in releases 3.80 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-4	2-5
1	HL_3IGI_009	3IGI	0.6936	0	Other HL	A	Group IIC intron	C	368	G	369	A	370	A	371	C	372	G	373	cWW		tSW
2	HL_7RQB_065	7RQB	0.6812	0	Other HL (H)	1A	LSU rRNA	C	2701	U	2702	C	2703	C	2704	A	2705	G	2706	cWW	cSH
3	HL_7TZS_001	7TZS	0.4934	1		X	TPP riboswitch (THI element)	C	27	U	28	C	30	G	31	U	32	G	33	cWW		tWW
4	HL_4LX6_002	4LX6	0.1232	2		A	Purine riboswitch	G	46	C	47	C	50	C	51	A	52	C	53	cWW
5	HL_4XNR_002	4XNR	0.0725	2		X	Purine riboswitch	G	46	U	47	C	50	U	51	A	52	C	53	cWW	ntWH
6	HL_1Y26_002	1Y26	0.0595	2		X	Purine riboswitch	G	46	U	47	C	50	U	51	A	52	C	53	cWW	ntWH
7	HL_1Y27_002	1Y27	0.0614	2		X	Purine riboswitch	G	46	U	47	C	50	U	51	A	52	C	53	cWW
8	HL_4FEN_002	4FEN	0.0000	2		B	A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain	G	46	U	47	C	50	U	51	A	52	C	53	cWW	ntWH
9	HL_3RKF_008	3RKF	0.1254	2		C	Guanine riboswitch	G	46	U	47	C	50	U	51	A	52	C	53	cWW	ntWH
10	HL_3LA5_002	3LA5	0.1578	2		A	Purine riboswitch	G	46	C	47	C	50	C	51	A	52	C	53	cWW
11	HL_4V84_034	4V84	0.4286	2		AV	RNA (34-MER)	U	6185	U	6186	G	6189	U	6190	A	6191	G	6192	cWW
12	HL_7A0S_052	7A0S	0.4712	3		X	LSU rRNA	C	2227	U	2228	G	2232	C	2233	G	2234	G	2235	cWW
13	HL_4WF9_049	4WF9	0.4712	3		X	LSU rRNA	C	2275	U	2276	G	2280	C	2281	G	2282	G	2283	cWW
14	HL_4V9F_055	4V9F	0.4964	3		0	LSU rRNA	C	2281	U	2282	G	2286	C	2287	G	2288	G	2289	cWW
15	HL_5TBW_054	5TBW	0.6152	3		1	LSU rRNA	C	2616	U	2617	G	2621	C	2622	G	2623	G	2624	cWW
16	HL_8C3A_055	8C3A	0.5756	3		1	LSU rRNA	C	2588	U	2589	G	2593	C	2594	G	2595	G	2596	cWW
17	HL_2A64_006	2A64	0.5714	6		A	ribonuclease P RNA	C	313	G	314	G	321	C	322	A	323	G	324	cWW		ntSH
18	HL_3OIN_001	3OIN	0.6875	2		C	RNA (14-mer)	C	4	U	5	A	8	A	9	C	10	G	11	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUUCUAC	5
CUGGGGCGG	5
GCUUCCAC	2
CGAACG	1
CUCCAG	1
CUGCGUG	1
UUAGGUAG	1
CGGCGCAUGCAG	1
CUUCAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUUCUA	5
UGGGGCG	5
CUUCCA	2
GAAC	1
UCCA	1
UGCGU	1
UAGGUA	1
GGCGCAUGCA	1
UUCAAC	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (16)
Other HL (1)
Other HL (H) (1)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.06 | Avg 0.46 | Max 0.86

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