HL_5DFE_108

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAC

Length

4 nucleotides

Bulged bases

5DFE|1|XA|U|84, 5DFE|1|XA|A|88

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_108 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3227

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5DFE|1|XA|G|80
5DFE|1|XA|U|84
5DFE|1|XA|A|88
5DFE|1|XA|C|89

Current chains

Chain XA

16S rRNA

Nearby chains