HL_5DFE_141
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUCAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DFE_141 not in the Motif Atlas
- Homologous match to HL_4WSM_226
- Geometric discrepancy: 0.3534
- The information below is about HL_4WSM_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22031.2
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DFE|1|XV|G|52
5DFE|1|XV|G|53
5DFE|1|XV|U|54
5DFE|1|XV|U|55
5DFE|1|XV|C|56
5DFE|1|XV|A|57
5DFE|1|XV|A|58
5DFE|1|XV|A|59
5DFE|1|XV|U|60
5DFE|1|XV|C|61
5DFE|1|XV|C|62
Current chains
- Chain XV
- P-site tRNA fMet
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YG
- 50S ribosomal protein L5
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
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