HL_5DFE_166

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

5DFE|1|YA|U|827, 5DFE|1|YA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_166 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.0571

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5DFE|1|YA|U|826
5DFE|1|YA|U|827
5DFE|1|YA|U|828
5DFE|1|YA|A|829
5DFE|1|YA|G|830
5DFE|1|YA|G|831

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YP

50S ribosomal protein L15