HL_5DFE_178

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5DFE|1|YA|C|1493, 5DFE|1|YA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DFE_178 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.094

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5DFE|1|YA|G|1492
5DFE|1|YA|C|1493
5DFE|1|YA|A|1494
5DFE|1|YA|A|1495
5DFE|1|YA|A|1496
5DFE|1|YA|U|1497
5DFE|1|YA|C|1498

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2