HL_5DFE_195
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 5DFE|1|YA|A|2268, 5DFE|1|YA|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DFE_195 not in the Motif Atlas
- Homologous match to HL_7RQB_054
- Geometric discrepancy: 0.0493
- The information below is about HL_7RQB_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.6
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DFE|1|YA|C|2264
5DFE|1|YA|U|2265
5DFE|1|YA|A|2266
5DFE|1|YA|A|2267
5DFE|1|YA|A|2268
5DFE|1|YA|A|2269
5DFE|1|YA|G|2270
5DFE|1|YA|G|2271
5DFE|1|YA|U|2272
5DFE|1|YA|A|2273
5DFE|1|YA|A|2274
5DFE|1|YA|C|2275
5DFE|1|YA|G|2276
Current chains
- Chain YA
- T23S rRNA
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
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