HL_5DGE_095

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUUUUUUAAUGA

Length

12 nucleotides

Bulged bases

5DGE|1|2|U|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGE_095 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3988

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5DGE|1|2|U|1054
5DGE|1|2|U|1055
5DGE|1|2|U|1056
5DGE|1|2|U|1057
5DGE|1|2|U|1058
5DGE|1|2|U|1059
5DGE|1|2|U|1060
5DGE|1|2|A|1061
5DGE|1|2|A|1062
5DGE|1|2|U|1063
5DGE|1|2|G|1064
5DGE|1|2|A|1065

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

40S ribosomal protein S17-A

Chain D7

40S ribosomal protein S27-A

Chain S1

40S ribosomal protein S1-A