HL_5DGE_136

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

5DGE|1|5|A|1025, 5DGE|1|5|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGE_136 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3985

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5DGE|1|5|C|1023
5DGE|1|5|G|1024
5DGE|1|5|A|1025
5DGE|1|5|A|1026
5DGE|1|5|A|1027
5DGE|1|5|U|1028
5DGE|1|5|G|1029

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain e1

Ubiquitin-40S ribosomal protein S31

Chain m1

60S ribosomal protein L11-A

Chain sM

Suppressor protein STM1