HL_5DGE_176

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

5DGE|1|5|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGE_176 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0794

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5DGE|1|5|A|2897
5DGE|1|5|G|2898
5DGE|1|5|C|2899
5DGE|1|5|A|2900
5DGE|1|5|G|2901
5DGE|1|5|A|2902
5DGE|1|5|A|2903
5DGE|1|5|U|2904

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l9

60S ribosomal protein L9-A

Chain q0

Ubiquitin-60S ribosomal protein L40