HL_5DGE_245

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

5DGE|1|1|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGE_245 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.5216

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5DGE|1|1|U|1267
5DGE|1|1|G|1268
5DGE|1|1|U|1269
5DGE|1|1|A|1270
5DGE|1|1|A|1271
5DGE|1|1|C|1272
5DGE|1|1|A|1273
5DGE|1|1|A|1274

Current chains

Chain 1

25S ribosomal RNA

Nearby chains