HL_5DGF_012

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

5DGF|1|1|U|545, 5DGF|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_012 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.176

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5DGF|1|1|U|540
5DGF|1|1|U|541
5DGF|1|1|G|542
5DGF|1|1|C|543
5DGF|1|1|C|544
5DGF|1|1|U|545
5DGF|1|1|C|546
5DGF|1|1|G|547
5DGF|1|1|G|548
5DGF|1|1|U|549
5DGF|1|1|A|550
5DGF|1|1|A|551

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N0

60S ribosomal protein L20-A