HL_5DGF_039
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCACCUUUGC
- Length
- 10 nucleotides
- Bulged bases
- 5DGF|1|1|C|1762
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGF_039 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.291
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|1|G|1758
5DGF|1|1|C|1759
5DGF|1|1|A|1760
5DGF|1|1|C|1761
5DGF|1|1|C|1762
5DGF|1|1|U|1763
5DGF|1|1|U|1764
5DGF|1|1|U|1765
5DGF|1|1|G|1766
5DGF|1|1|C|1767
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M9
- 60S ribosomal protein L19-A
- Chain N2
- 60S ribosomal protein L22-A
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