HL_5DGF_051

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

5DGF|1|1|A|2372, 5DGF|1|1|A|2373, 5DGF|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_051 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0621

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5DGF|1|1|G|2369
5DGF|1|1|G|2370
5DGF|1|1|G|2371
5DGF|1|1|A|2372
5DGF|1|1|A|2373
5DGF|1|1|C|2374
5DGF|1|1|G|2375
5DGF|1|1|G|2376
5DGF|1|1|G|2377
5DGF|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain O2

60S ribosomal protein L32