HL_5DGF_052
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGACAUAGUUU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGF_052 not in the Motif Atlas
- Homologous match to HL_5TBW_052
- Geometric discrepancy: 0.2109
- The information below is about HL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59851.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|1|A|2441
5DGF|1|1|G|2442
5DGF|1|1|A|2443
5DGF|1|1|C|2444
5DGF|1|1|A|2445
5DGF|1|1|U|2501
5DGF|1|1|A|2502
5DGF|1|1|G|2503
5DGF|1|1|U|2504
5DGF|1|1|U|2505
5DGF|1|1|U|2506
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain O6
- 60S ribosomal protein L36-A
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