HL_5DGF_142

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

5DGF|1|5|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_142 not in the Motif Atlas

Geometric match to HL_4TUE_033

Geometric discrepancy: 0.3838

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5DGF|1|5|C|1238
5DGF|1|5|C|1239
5DGF|1|5|A|1240
5DGF|1|5|U|1241
5DGF|1|5|G|1242
5DGF|1|5|G|1243
5DGF|1|5|A|1244
5DGF|1|5|A|1245
5DGF|1|5|G|1246
5DGF|1|5|U|1247
5DGF|1|5|C|1248
5DGF|1|5|G|1249
5DGF|1|5|G|1250

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12-A (uL11)