HL_5DGF_189
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 5DGF|1|6|U|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGF_189 not in the Motif Atlas
- Homologous match to HL_4V88_187
- Geometric discrepancy: 0.2592
- The information below is about HL_4V88_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38701.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|6|C|70
5DGF|1|6|A|71
5DGF|1|6|A|72
5DGF|1|6|U|73
5DGF|1|6|U|74
5DGF|1|6|U|75
5DGF|1|6|A|76
5DGF|1|6|U|77
5DGF|1|6|A|78
5DGF|1|6|C|79
5DGF|1|6|A|80
5DGF|1|6|G|81
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
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