HL_5DGF_212

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGF_212 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0824

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5DGF|1|6|A|1084
5DGF|1|6|G|1085
5DGF|1|6|A|1086
5DGF|1|6|A|1087
5DGF|1|6|A|1088
5DGF|1|6|U|1089

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d6

40S ribosomal protein S26-B

Chain s2

40S ribosomal protein S2