HL_5DGF_235
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 5DGF|1|5|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGF_235 not in the Motif Atlas
- Homologous match to HL_8P9A_139
- Geometric discrepancy: 0.1971
- The information below is about HL_8P9A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DGF|1|5|C|1239
5DGF|1|5|A|1240
5DGF|1|5|U|1241
5DGF|1|5|G|1242
5DGF|1|5|G|1243
5DGF|1|5|A|1244
5DGF|1|5|A|1245
5DGF|1|5|G|1246
5DGF|1|5|U|1247
5DGF|1|5|C|1248
5DGF|1|5|G|1249
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m2
- 60S ribosomal protein L12-A (uL11)
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