HL_5DGV_047

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

5DGV|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_047 not in the Motif Atlas

Homologous match to HL_5TBW_047

Geometric discrepancy: 0.0646

The information below is about HL_5TBW_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5DGV|1|1|A|2164
5DGV|1|1|G|2165
5DGV|1|1|A|2166
5DGV|1|1|A|2167
5DGV|1|1|A|2168
5DGV|1|1|G|2169
5DGV|1|1|U|2170

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain L8

60S ribosomal protein L8-A (eL8)

Chain M5

60S ribosomal protein L15-A