HL_5DGV_092

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DGV_092 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1298

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5DGV|1|2|A|900
5DGV|1|2|G|901
5DGV|1|2|G|902
5DGV|1|2|U|903
5DGV|1|2|G|904
5DGV|1|2|A|905
5DGV|1|2|A|906
5DGV|1|2|A|907
5DGV|1|2|U|908
5DGV|1|2|U|909

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C4

40S ribosomal protein S14-A

Chain D6

40S ribosomal protein S26-B