HL_5DGV_105
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5DGV|1|2|U|1557, 5DGV|1|2|U|1558, 5DGV|1|2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_105 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.0953
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5DGV|1|2|A|1550
5DGV|1|2|U|1551
5DGV|1|2|U|1552
5DGV|1|2|G|1553
5DGV|1|2|U|1554
5DGV|1|2|A|1555
5DGV|1|2|A|1556
5DGV|1|2|U|1557
5DGV|1|2|U|1558
5DGV|1|2|A|1559
5DGV|1|2|U|1560
5DGV|1|2|U|1561
Current chains
- Chain 2
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain C5
- 40S ribosomal protein S15
- Chain C8
- 40S ribosomal protein S18-A
- Chain C9
- 40S ribosomal protein S19-A
- Chain D9
- 40S ribosomal protein S29-A
- Chain SM
- Suppressor protein STM1
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