HL_5DGV_127
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 5DGV|1|5|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_127 not in the Motif Atlas
- Homologous match to HL_5TBW_014
- Geometric discrepancy: 0.0611
- The information below is about HL_5TBW_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5DGV|1|5|U|640
5DGV|1|5|C|641
5DGV|1|5|U|642
5DGV|1|5|U|643
5DGV|1|5|G|644
5DGV|1|5|A|645
5DGV|1|5|A|646
5DGV|1|5|A|647
5DGV|1|5|C|648
5DGV|1|5|A|649
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain n8
- 60S ribosomal protein L28
- Chain o2
- 60S ribosomal protein L32
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