HL_5DGV_142
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 5DGV|1|5|A|1352, 5DGV|1|5|U|1353, 5DGV|1|5|G|1354, 5DGV|1|5|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_142 not in the Motif Atlas
- Homologous match to HL_8P9A_141
- Geometric discrepancy: 0.5347
- The information below is about HL_8P9A_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_29762.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5DGV|1|5|U|1347
5DGV|1|5|U|1348
5DGV|1|5|G|1349
5DGV|1|5|A|1350
5DGV|1|5|U|1351
5DGV|1|5|A|1352
5DGV|1|5|U|1353
5DGV|1|5|G|1354
5DGV|1|5|A|1355
5DGV|1|5|U|1356
5DGV|1|5|G|1357
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l4
- 60S ribosomal protein L4-A
- Chain l6
- 60S ribosomal protein L6-A
- Chain m8
- 60S ribosomal protein L18-A
- Chain o2
- 60S ribosomal protein L32
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