HL_5DGV_164
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 5DGV|1|5|A|2372, 5DGV|1|5|A|2373, 5DGV|1|5|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_164 not in the Motif Atlas
- Homologous match to HL_5TBW_051
- Geometric discrepancy: 0.0595
- The information below is about HL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DGV|1|5|G|2369
5DGV|1|5|G|2370
5DGV|1|5|G|2371
5DGV|1|5|A|2372
5DGV|1|5|A|2373
5DGV|1|5|C|2374
5DGV|1|5|G|2375
5DGV|1|5|G|2376
5DGV|1|5|G|2377
5DGV|1|5|C|2378
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain o2
- 60S ribosomal protein L32
Coloring options: