HL_5DGV_166
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AAUUCAUUUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_166 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1573
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
5DGV|1|5|A|2535
5DGV|1|5|A|2536
5DGV|1|5|U|2537
5DGV|1|5|U|2538
5DGV|1|5|C|2539
5DGV|1|5|A|2540
5DGV|1|5|U|2541
5DGV|1|5|U|2542
5DGV|1|5|U|2543
5DGV|1|5|U|2544
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l8
- 60S ribosomal protein L8-A (eL8)
- Chain s1
- 40S ribosomal protein S1-A
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