HL_5DGV_248
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 5DGV|1|6|G|1243, 5DGV|1|6|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DGV_248 not in the Motif Atlas
- Homologous match to HL_8P9A_216
- Geometric discrepancy: 0.1529
- The information below is about HL_8P9A_216
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5DGV|1|6|A|1238
5DGV|1|6|U|1239
5DGV|1|6|U|1240
5DGV|1|6|G|1241
5DGV|1|6|A|1242
5DGV|1|6|G|1243
5DGV|1|6|A|1244
5DGV|1|6|G|1245
5DGV|1|6|C|1246
5DGV|1|6|U|1247
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
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