HL_5DM6_005

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM6_005 not in the Motif Atlas

Homologous match to HL_7A0S_005

Geometric discrepancy: 0.1958

The information below is about HL_7A0S_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5DM6|1|X|C|148
5DM6|1|X|G|149
5DM6|1|X|C|150
5DM6|1|X|A|151
5DM6|1|X|A|152
5DM6|1|X|G|153

Current chains

Chain X

23S ribosomal RNA

Nearby chains