HL_5DM6_007

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAUU

Length

6 nucleotides

Bulged bases

5DM6|1|X|U|201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM6_007 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.1368

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

5DM6|1|X|A|197
5DM6|1|X|G|198
5DM6|1|X|A|199
5DM6|1|X|A|200
5DM6|1|X|U|201
5DM6|1|X|U|202

Current chains

Chain X

23S ribosomal RNA

Nearby chains