HL_5DM6_012
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCGUGAAAC
- Length
- 11 nucleotides
- Bulged bases
- 5DM6|1|X|G|386, 5DM6|1|X|A|389
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DM6_012 not in the Motif Atlas
- Homologous match to HL_7A0S_013
- Geometric discrepancy: 0.1507
- The information below is about HL_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.8
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5DM6|1|X|G|382
5DM6|1|X|U|383
5DM6|1|X|U|384
5DM6|1|X|C|385
5DM6|1|X|G|386
5DM6|1|X|U|387
5DM6|1|X|G|388
5DM6|1|X|A|389
5DM6|1|X|A|390
5DM6|1|X|A|391
5DM6|1|X|C|392
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L28
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