HL_5DM6_068

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5DM6|1|X|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM6_068 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.0683

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5DM6|1|X|G|2819
5DM6|1|X|A|2820
5DM6|1|X|A|2821
5DM6|1|X|G|2822
5DM6|1|X|A|2823
5DM6|1|X|C|2824
5DM6|1|X|C|2825
5DM6|1|X|A|2826
5DM6|1|X|C|2827

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19