HL_5DM6_073

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCGUAACUAUAACGG

Length

15 nucleotides

Bulged bases

5DM6|1|X|A|1912, 5DM6|1|X|C|1914, 5DM6|1|X|U|1915, 5DM6|1|X|U|1917, 5DM6|1|X|A|1918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|C|1908
5DM6|1|X|C|1909
5DM6|1|X|G|1910
5DM6|1|X|U|1911
5DM6|1|X|A|1912
5DM6|1|X|A|1913
5DM6|1|X|C|1914
5DM6|1|X|U|1915
5DM6|1|X|A|1916
5DM6|1|X|U|1917
5DM6|1|X|A|1918
5DM6|1|X|A|1919
5DM6|1|X|C|1920
5DM6|1|X|G|1921
5DM6|1|X|G|1922

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16