HL_5DM8_002
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGGAGAUACG
- Length
- 11 nucleotides
- Bulged bases
- 5DM8|1|X|G|92
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5DM8_002 not in the Motif Atlas
- Geometric match to HL_7A0S_002
- Geometric discrepancy: 0.1719
- The information below is about HL_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76590.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5DM8|1|X|C|86
5DM8|1|X|U|87
5DM8|1|X|G|88
5DM8|1|X|G|90
5DM8|1|X|A|91
5DM8|1|X|G|92
5DM8|1|X|A|93
5DM8|1|X|U|94
5DM8|1|X|A|95
5DM8|1|X|C|96
5DM8|1|X|G|97
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain Q
- 50S ribosomal protein L23
- Chain R
- 50S ribosomal protein L24
- Chain V
- 50S ribosomal protein L29
Coloring options: