HL_5DM8_005

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_005 not in the Motif Atlas

Geometric match to HL_3NDB_002

Geometric discrepancy: 0.1136

The information below is about HL_3NDB_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5DM8|1|X|C|148
5DM8|1|X|G|149
5DM8|1|X|C|150
5DM8|1|X|A|151
5DM8|1|X|A|152
5DM8|1|X|G|153

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains