HL_5DM8_013

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5DM8|1|X|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_013 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.185

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5DM8|1|X|G|410
5DM8|1|X|G|411
5DM8|1|X|A|412
5DM8|1|X|C|413
5DM8|1|X|C|414
5DM8|1|X|A|415
5DM8|1|X|C|416
5DM8|1|X|C|417

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains