HL_5DM8_028

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5DM8|1|X|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5DM8_028 not in the Motif Atlas

Geometric match to HL_6PRV_001

Geometric discrepancy: 0.2067

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5DM8|1|X|C|1064
5DM8|1|X|U|1065
5DM8|1|X|U|1066
5DM8|1|X|A|1067
5DM8|1|X|G|1068
5DM8|1|X|A|1069
5DM8|1|X|A|1070
5DM8|1|X|G|1071
5DM8|1|X|C|1072
5DM8|1|X|A|1073
5DM8|1|X|G|1074

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain F

50S ribosomal protein L11

Chain J

50S ribosomal protein L16